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Gpap.html is start point of GPAP application to let user
upload their Biological or Technical replicates of GPR files, GAL file and
specify layout of GAL file, filtering criteria and normalization method.
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If a user has already uploaded files, he can request result
file from request.html. Enter the request ID that he was assigned after he uploaded his
files.
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After the user click Process or Get Result Button, he will enter
Statistics Summary page, from this page, user can go to different result page.
Statistics summary page will show the user what files he has uploaded and what filtering criteria and normalization
method he
has chosen. Also this page will show the user how many
valid ratios have been generated for each GPR file and correlation coefficients
between GPR files.
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If the user click Diagnose Plot link, he will get diagnose plot page. From Plot
Type drop down box, he can view different plots. the User can also go to other
different result files from diagnose page.
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If the user click Report click, he will get report page. From
Report Type drop down box, he can view different report. And click Download
File link to download these reports. User can also go to different result files
from this page.
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If the user click Significantly Differentially Expressed Genes link, he will get
significantly differentially expressed genes page. From Gene List drop down box,
the user can choose different number of Significantly
Differentially Expressed Genes list to see. All the genes are ranked from most
likely Differentially Expressed Genes to least likely Differentially Expressed
Genes. Click Download File link, the user can download the file. From left navigation
bar, the user can go to other different result file.
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